open-science-training-handbook

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by Fawad , Simon

1. 5. Open Access to Published Research Results
   1. What is it?
   2. Rationale
   3. Learning objectives
   4. Key components
      1. Knowledge
         1. Repositories and self-archiving
         2. Open Access publishing
   5. Skills
   6. Questions, obstacles, and common misconceptions
   7. Learning outcomes
   8. Further reading
2. 4. Reproducible Research and Data Analysis
   1. What is it?
   2. Rationale
   3. Learning objectives
   4. Knowledge
   5. Skills
      1. 1. Plan for reproducibility before you start
         1. Create a study plan or protocol.
         2. Choose reproducible tools and materials
         3. Set-up a reproducible project
      2. 2. Keep track of things
         1. Registration
         2. Version control
         3. Documentation
         4. Literate programming
      3. 3. Share and license your research
         1. Data
         2. Materials
         3. Software, notebooks, and containers
      4. 4. Report your research transparently
   6. Questions, obstacles, and common misconceptions
   7. Learning outcomes
   8. Further reading
3. 3. Open Research Software and Open Source
   1. What is it?
   2. Rationale
   3. Learning objectives
      1. Key components
      2. Knowledge
      3. Open Source Hardware
      4. Skills
      5. Questions, obstacles, and common misconceptions
      6. Learning outcomes
      7. Further reading
4. 2. Open Research Data and Materials
   1. What is it?
      1. Rationale
      2. Learning objectives
      3. Key components
         1. Knowledge & Skills
            1. FAIR principles
               1. Data publishing
               2. Data citation
               3. Data packaging
               4. Sharing sensitive and proprietary data
                  1. Data brokers
               5. Analysis portals
               6. De-identified and synthetic data
                  1. DataTags
               7. Open Materials
                  1. Reagents
                  2. Protocols
                  3. Notebooks, containers, software, and hardware
         2. Questions, obstacles, and common misconceptions
         3. Learning outcomes
         4. Further reading
            1. Initiatives and projects
5. 1. Open Concepts and Principles
   1. What is it?
   2. Rationale
   3. Learning objectives
   4. Key components
   5. Knowledge & Skills
   6. Questions, obstacles, and common misconceptions
   7. Learning outcomes
   8. Further reading
6. Introduction
   1. Purpose of the book
      1. Who is this book for?
      2. What is Open Science?
      3. How to use the book
      4. Open License and Credits
7. Open Science Basics
   1. Chapters
8. Readme
   1. The Open Science Training Handbook
   2. Help us making the handbook better
   3. Let's run an Open Science training together
   4. How to refer to the handbook
      1. The Authors and the Book Sprint facilitators
      2. Thank you to
      3. Copyright statement
      4. Funding
9. The Way-Way-Back Machine

Published by: tib

Last Updated: 26/03/2019

Created: 26/03/2019

Language: English

Created by: Simon Worthington